GUO, Weilong
Weilong GUO
PhD, Bioinformatics
Professor
Wheat Genetics and Genomics Center
Department of Seed Science and Biotechnology
China Agricultural University
No 2 West YuanMingYuan Road
Haidian District, Beijing
China, 100094
Email :
or (alternative)

Education & Research [top]

2023.12-present Professor

Wheat Genetics & Genomics Center (WGGC)
Department of Seed Science and Biotechnology
College of Agronomy and Biotechnology
China Agricultural University

2017.12-2023.12 Associate Professor

Wheat Genetics & Genomics Center (WGGC)
Department of Crop Genomics and Bioinformatics
College of Agronomy and Biotechnology
China Agricultural University

2016.06-2017.12 Lecturer (Jiangshi)

Wheat Genetics & Genomics Lab
Department of Crop Genomics and Bioinformatics
College of Agronomy and Biotechnology
China Agricultural University

2014.07-2016.06 POSTDOC

2009.09-2014.07 PH.D.

2012.10-2013.10 Visiting student

MCDB department, UCLA
Visiting Graduate Researcher (CSC scholarship)
Supervisor: Prof. Matteo Pellegrini

2005.09-2009.07 B.E.

School of Software Engineering
Beijing University of Posts and Telecommunications (BUPT)
Major : Software Engineering

Selected Publications [top]

(* First/Co-first Author; # Corresponding/Co-corresponding author)

(29) Xiaoming Xie*, Yongming Chen*, Yuqi Zhang*, Zihao Wang, Yibo Wang, Peng Zhao, Huiru Peng, Chaojie Xie, Yingyin Yao, Zhongfu Ni, Qixin Sun, Weilong Guo# (2026) The digital map of homologous gene clusters across Poaceae species unveils the complex evolutionary trajectories of genes in Triticeae , Molecular Plant, ##(##):##.
DOI: 10.1016/j.molp.2026.08.021
[Software: GoldMiner ]
[Database: waGOLD ]

(28) Xiaoming Xie*, Peng Zhao*, Yuqi Zhang, Wenxi Wang, Zihao Wang, Zhaoxing Yu, Zhe Chen, Baoyue Zhang, Mingming Xin, Zhongfu Ni, Qixin Sun, Weilong Guo# (2026) Beyond the Data: Artificial Intelligence, Knowledge Graphs, and the Next Revolution in Wheat Breeding , Plant Communications , 7(5):101841.
DOI: 10.1016/j.xplc.2026.101841

(27) Xiaojiang Guo*, Zhe Chen*, Xin Liu, Lingfeng Miao, Yongming Chen, Yingyin Yao, Jinkun Du, Qixin Sun, Zhongfu Ni#, Jirui Wang#, Weilong Guo# (2025) Dynamic regulation and embryo-endosperm crosstalk revealed by whole transcriptome profiling of wheat seed development , Cell Reports , 44(9):116195.
DOI: 10.1016/j.celrep.2025.116195

(26) Yingyin Yao*, Weilong Guo*, Jinying Gou*, Zhaorong Hu, Jie Liu, Jun Ma, Yuan Zong, Mingming Xin, Wei Chen, Qiang Li, Zihao Wang, Ruijie Zhang, Cristobal Uauy, Faheem Shehzad Baloch, Zhongfu Ni #, Qixin Sun #. (2025) Wheat2035: Integrating Pan-omics and Advanced Biotechnology for Future Wheat Design, Molecular Plant, 18(2):272-297. (* Co-first Authors; # Corresponding Authors)
DOI: 10.1016/j.molp.2025.01.005
(Perspective)
[Resource: WGC / Wheat Genomics Collections ]

(25) Hao Wang*, Shen Yan*, Wenxi Wang*, Yongming Chen, Jingpeng Hong, Qiang He, Xianmin Diao, Yunan Lin, Yanqing Chen, Yongsheng Cao#, Weilong Guo#, Wei Fang#. (2025) Cropformer: An Interpretable Deep Learning Framework for Crop Genomic Prediction, Plant Communications, 6(3):101223. (# Corresponding Authors)
DOI: 10.1016/j.xplc.2024.101223
[Software: Cropformer]

(24) Chengzhi Jiao*, Xiaoming Xie*, Chenyang Hao*, Liyang Chen *, Yuxin Xie, Vanika Garg, Li Zhao, Zihao Wang, Yuqi Zhang, Tian Li, Junjie Fu, Annapurna Chitikineni, Jian Hou, Hongxia Liu, Girish Dwivedi, Xu Liu, Jizeng Jia, Long Mao, Xiue Wang, Rudi Appels, Rajeev K. Varshney#, Weilong Guo#, Xueyong Zhang#. (2025) Pan-genome bridges wheat structural variations with habitat and breeding, Nature, 637(8045):384-393. (# Corresponding Authors)
DOI: 10.1038/s41586-024-08277-0

(23) Lingfeng Miao, Zhe Chen, Lifeng Gao, Jizeng Jia, Weilong Guo#, Guangyao Zhao#. (2024) Integrated multi-omics reveals contrasting epigenetic patterns in leaf and root morphogenesis in Aegilops speltoides, The Crop Journal, 13(1):292-298. (# Corresponding Authors)
DOI: 10.1016/j.cj.2024.09.015

(22) Zihao Wang, Wenxi Wang, Yachao He, Xiaoming Xie, Zhengzhao Yang, Xiaoyu Zhang, Jianxia Niu, Huiru Peng, Yingyin Yao, Chaojie Xie, Mingming Xin, Zhaorong Hu, Qixin Sun, Zhongfu Ni #, Weilong Guo #. (2024) On the evolution and genetic diversity of bread wheat D genome, Molecular Plant, 17(11):1672-1686. (# Corresponding Authors)
DOI: 10.1016/j.molp.2024.09.007

(21) Jianxia Niu *, Wenxi Wang *, Zihao Wang *, Zhe Chen, Xiaoyu Zhang, Zhen Qin, Lingfeng Miao, Zhengzhao Yang, Chaojie Xie, Mingming Xin, Huiru Peng, Yingyin Yao, Jie Liu, Zhongfu Ni, Qixin Sun #, Weilong Guo #. (2024) Tagging large CNV blocks in wheat boosts digitalization of germplasm resources by ultra-low-coverage sequencing, Genome Biology, 25(1):171. (# Corresponding Authors)
DOI: 10.1186/s13059-024-03315-6
[Database: WheatCNVb]

(20) Wenxi Wang *, Zhe Chen, Zhengzhao Yang, Zihao Wang, Jilu Liu, Jie Liu, Huiru Peng, Zhenqi Su, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2024) lcQTH: rapid quantitative trait mapping through tracing parental haplotype with ultra-low-coverage sequencing, Plant Communications, 5(10):101008. (# Corresponding Authors)
DOI: 10.1016/j.xplc.2024.101008
[Software: lcQTH]

(19) Zhaoheng Zhang *, Dan Liu *, Binyong Li, Wenxi Wang, Jize Zhang, Mingming Xin, Zhaorong Hu, Jie Liu, Jinkun Du, Huiru Peng, Chenyang Hao, Xueyong Zhang, Zhongfu Ni, Qixin Sun, Weilong Guo #, Yingyin Yao #. (2024) A k-mer-based pangenome approach for cataloging seed-storage-protein genes in wheat to facilitate genotype-to-phenotype prediction and improvement of end-use quality, Molecular Plant, 17(7):1038-1053. (# Corresponding Authors)
DOI: 10.1016/j.molp.2024.05.006
[Software: PanSK]

(18) Yongfa Wang *, Zihao Wang *, Yongming Chen, Tianyu Lan, Xiaobo Wang, Gang Liu, Mingming Xin, Zhaorong Hu, Yingyin Yao, Zhongfu Ni, Qixin Sun, Weilong Guo #, Huiru Peng #. (2024) Genomic insights into the origin and evolution of spelt (Triticum spelta L.) as a valuable gene pool for modern wheat breeding, Plant Communications, 5(5):100883. (# Corresponding Authors)
DOI: 10.1016/j.xplc.2024.100883

(17) Lingfeng Miao *, Weiya Xu *, Yanhong Liu, Xiangyi Huang, Zhe Chen, Huifang Wang, Zihao Wang, Yongming Chen, Qingxin Song, Jing Zhang, Fangpu Han, Huiru Peng, Yingyin Yao, Mingming Xin, Zhaorong Hu, Zhongfu Ni, Qixin Sun, Jiewen Xing #, Weilong Guo #. (2024) Reshaped DNA methylation cooperating with homoeolog-divergent expression promotes improved root traits in synthesized tetraploid wheat, New Phytologist, 242(2):507-523. (# Corresponding Authors)
DOI: 10.1111/nph.19593

(16) Yongming Chen *, Wenxi Wang *, Zhengzhao Yang, Huiru Peng, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2024) Innovative computational tools provide new insights into the polyploid wheat genome, aBIOTECH, 5(1):52-70. (# Corresponding Authors)
DOI: 10.1007/s42994-023-00131-7
(Review)
[Resource: Tutorial page]

(15) Zihao Wang, Lingfeng Miao, Yongming Chen, Huiru Peng, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2023) Deciphering the evolution and complexity of wheat germplasm from a genomic perspective, Journal of Genetics and Genomics, 50(11):846-860. (# Corresponding Authors)
DOI: 10.1016/j.jgg.2023.08.002
(Review)

(14) Zhaoheng Zhang *, Ruijie Zhang *, Fengfan Meng, Yongming Chen, Wenxi Wang, Kai Yang, Yujiao Gao, Mingming Xin, Jinkun Du, Zhaorong Hu, Zhongfu Ni, Qixin Sun, Weilong Guo #, Yingyin Yao #. (2023) A comprehensive atlas of long non-coding RNAs provides insight into grain development in wheat, Seed Biology, 2:12. (# Corresponding Authors)
DOI: 10.48130/SeedBio-2023-0012
[Database: wLNCdb]

(13) Yongming Chen, Yiwen Guo, Xiaoming Xie, Zihao Wang, Lingfeng Miao, Zhengzhao Yang, Yuannian Jiao, Chaojie Xie, Jie Liu, Zhaorong Hu, Mingming Xin, Yingyin Yao, Zhongfu Ni, Qixin Sun, Huiru Peng #, Weilong Guo #. (2023) Pangenome-based trajectories of intracellular gene transfers in Poaceae unveil high cumulation in Triticeae, Plant Physiology, 193(1):578-594. (# Corresponding Authors)
DOI: 10.1093/plphys/kiad319
[Software: IGTminer]
[Database: pNOGmap]

(12) Dawa Dondup *, Yang Yang *, Dongdong Xu *, Lhundrup Namgyal, Zihao Wang, Xia Shen, Tsechoe Dorji, Nyima kyi, Lhakpa Drolma, Liyun Gao, Zhuo Ga, Zha Sang, Zhuo Ga, Wang Mu, Pubu Zhuoma, Xiongnu Taba, Guocheng Jiao, Wenhua Liao, Yawei Tang, Xingquan Zeng, Zhaxi Luobu, Yufeng Wu, Chunchao Wang, Jing Zhang, Zengjun Qi #, Weilong Guo #, Ganggang Guo #. (2023) Genome diversity and highland-adaptative variation in Tibet barley landrace population of China, Frontiers in Plant Science, 14:1189642. (# Corresponding Authors; * Joint First Authors)
DOI: 10.3389/fpls.2023.1189642

(11) Zhichao Yu *, Yongming Chen *, Yong Zhou *, Yulu Zhang, Mengyuan Li, Yidan Ouyang, Dmytro Chebotarov, Ramil Mauleon, Hu Zhao, Weibo Xie, Kenneth L. McNally, Rod A. Wing #, Weilong Guo #, Jianwei Zhang #. (2023) Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice, Molecular Plant, 16(5):798-801. (# Corresponding Authors; * Joint First Authors)
DOI: 10.1016/j.molp.2023.03.012

(10) Yongming Chen *, Yiwen Guo *, Panfeng Guan, Yongfa Wang, Xiaobo Wang, Zihao Wang, Zhen Qin, Shengwei Ma, Mingming Xin, Zhaorong Hu, Yingyin Yao, Zhongfu Ni, Qixin Sun, Weilong Guo #, Huiru Peng #. (2022) A wheat integrative regulatory network from large-scale complementary functional datasets enables trait-associated gene discovery for crop improvement, Molecular Plant, 16(2):393-414. (# Corresponding Authors; * Joint First Authors)
DOI: 10.1016/j.molp.2022.12.019
[Database: wGRN]

(9) Zihao Wang, Wenxi Wang, Xiaoming Xie, Yongfa Wang, Zhengzhao Yang, Huiru Peng, Mingming Xin, Yingyin Yao, Zhaorong Hu, Jie Liu, Zhenqi Su, Chaojie Xie, Baoyun Li, Zhongfu Ni, Qixin Sun #, Weilong Guo #. (2022) Dispersed emergence and protracted domestication of polyploid wheat uncovered by mosaic ancestral haploblock inference, Nature Communications, 13:3891. (# Co-corresponding Author)
DOI: 10.1038/s41467-022-31581-0
[Software: IntroBlocker]
[Behind The Paper: What makes wheat a successful major crop?]

(8) Zhengzhao Yang *, Zihao Wang *, Wenxi Wang *, Xiaoming Xie, Lingling Chai, Xiaobo Wang, Xibo Feng, Jinghui Li, Huiru Peng, Zhenqi Su, Mingshan You, Yingyin Yao, Mingming Xin, Zhaorong Hu, Jie Liu, Rongqi Liang, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2022) ggComp enables dissection of germplasm resources and construction of a multiscale germplasm network in wheat, Plant Physiology, 188(4):1950-1965. (# Corresponding Author; * Joint First Authors)
DOI: 10.1093/plphys/kiac029
[Software: ggComp]
[Database: WheatCompDB]

(7) Yongming Chen, Wanjun Song, Xiaoming Xie, Zihao Wang, Panfeng Guan, Huiru Peng, Yuannian Jiao, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2020) A Collinearity-incorporating Homology Inference Strategy for Connecting Emerging Assemblies in Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era, Molecular Plant, 13(12):1694-1708. (# Corresponding Author)
DOI: 10.1016/j.molp.2020.09.019
[Featured Article: (On The Cover) ]
[Software: GeneTribe]
[Database: Triticeae-GeneTribe / TGT]

(6) Weilong Guo *, Mingming Xin *, Zihao Wang *, Yingyin Yao, Zhaorong Hu, Wanjun Song, Kuohai Yu, Yongming Chen, Xiaobo Wang, Panfeng Guan, Rudi Appels, Huiru Peng #, Zhongfu Ni #, Qixin Sun #. (2020) Origin and adaptation to high altitude of Tibetan semi-wild wheat, Nature Communications, 11:5085. (# Corresponding Authors; * Joint First Authors)
DOI: 10.1038/s41467-020-18738-5
[Resource Homepage: Zang817_Genome]
[SnpHub server: SnpHub-NC20]

(5) Wenxi Wang *, Zihao Wang *, Xintong Li, Zhongfu Ni, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Weilong Guo #. (2020) SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat, GigaScience, 9(6):giaa060. (# Corresponding Author; * Joint First Authors)
DOI: 10.1093/gigascience/giaa060
[Software: SnpHub]
[Webserver: Wheat-SnpHub-Portal]

(4) Weilong Guo*#, Ping Zhu*, Matteo Pellegrini, Michael Zhang, Xiangfeng Wang, Zhongfu Ni. (2018) CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data, Bioinformatics, 34(3):381–387. (# Corresponding Author; * Joint First Authors)
DOI: 10.1093/bioinformatics/btx595

[Software: CGmapTools]

(3) Weilong Guo#, Michael Zhang, Hong Wu#. (2016) Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements, Scientific Reports, 6:32207. [GEO:GSE77019](# Corresponding Authors) ㊥ [Erratum]
DOI: 10.1038/srep32207

(2) Weilong Guo, Wen-Yu Chung, Minping Qian, Matteo Pellegrini, Michael Q. Zhang. (2014) Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells, Nucleic Acids Research, 42(5):3009-3016.
DOI: 10.1093/nar/gkt1306

(1) Weilong Guo, Petko Fiziev, Weihong Yan, Shawn Cokus, Xueguang Sun, Michael Q Zhang, Pao-Yang Chen, Matteo Pellegrini. (2013) BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data. BMC Genomics, 14(1), 774.
DOI: 10.1186/1471-2164-14-774

[Software: BS-Seeker2]

All Publications [top]

2026 | 2025 | 2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 and before

★ First/Corresponding Author publications

2026

114. Jinpeng Li, Danyang Zhao, Xiao Peng, Xinran Wu, Chenji Zhang, Huitao An, Wei Chu, Jingchen Lin, Zehui Liu, Qun Yang, Debiao Liu, Xiaoyu Liu, Wanghongan Jia, Yi Pei, Mingming Xin, Yingyin Yao, Weilong Guo, Huiru Peng, Zhongfu Ni, Qixin Sun, Xingbei Liu, Zhaorong Hu (2026) TaHDA1‐mediated histone and non‐histone deacetylation orchestrates drought tolerance in wheat , Journal of Integrative Plant Biology, ##(##):##.
DOI: 10.1111/jipb.70384

★113. Xiaoming Xie*, Yongming Chen*, Yuqi Zhang*, Zihao Wang, Yibo Wang, Peng Zhao, Huiru Peng, Chaojie Xie, Yingyin Yao, Zhongfu Ni, Qixin Sun, Weilong Guo# (2026) The digital map of homologous gene clusters across Poaceae species unveils the complex evolutionary trajectories of genes in Triticeae , Molecular Plant, ##(##):##.
DOI: 10.1016/j.molp.2026.08.021
[Software: GoldMiner ]
[Database: waGOLD ]

112. Wei Pan, Jingyuan Yang, Boyuan Zhang, Jiarui Zhang, Junna Sun, Zuhuan Yang, Nannan Liu, Nannan Liu, Wenxin Wei, Qiang Zhang, Tzion Fahima, Weilong Guo, Jun Ma, Yinghui Li, Chaojie Xie (2026) Development of Hexaploid Wheat Germplasm with Resistance to Both Powdery Mildew and Stripe Rust by Introgression of Pm60 and YrU1 from Triticum urartu , Plants, 15(12):1802. h
DOI: 10.3390/plants15121802

111. Guang Qi, Guangwei Li, Rongzhi Zhang, Wei Li, Weilong Guo , Jun Zheng, HaoshengLi, Jianjun Liu, Takao Komatsuda, Cheng Liu (2026) A high-quality genome assembly delineates the genetic basis of freezing tolerance in the elite wheat cultivar Jimai 22 , Journal of Genetics and Genomics , ##(##):##.
DOI: 10.1016/j.jgg.2026.06.001

110. Chenyang Hao, Hude Mao, Yuan Zong, Ping Lu, Xiao Wang, Jindong Liu, Jin Xiao, Lichao Zhang, Lei Li, Weilong Guo , Jinying Gou, Jinfeng Ding, Yonggui Xiao, Chengzhi Jiao, Shengquan Zhang, Xue He, Xueqiang Zhao, Caiguo Tang, Xiaoting Xu, Yunchuan Liu, Xueyong Zhang (2026) A decade of excellent development in sciences and technologies drives more efficient wheat breeding and production in China , Journal of Integrative Agriculture , 25(10):2-31.
DOI: 10.1016/j.jia.2026.05.036

109. Yujie Jiang, Xiongtao Li, Yiqing Wang, Haoran Wang, Zhaoyan Chen, Chaoqun Dong, Xiangqing Liu, Xincheng Wang, Sufang Li, Weilong Guo , Yingyin Yao, Mingming Xin, Xingguo Ye, Zhongfu Ni, Qixin Sun, Jie Liu (2026) Post-Translational Control of TaFT1 by WAPO1 Ubiquitination Shapes Spike Architecture and Yield in Wheat , Plant Biotechnology Journal , 24(9):5094-5110.
DOI: 10.1111/pbi.70688

108. Jingchen Lin, Chenji Zhang, Zehui Liu, Jinpeng Li, Qun Yang, Wei Chu, Debiao Liu, Lei Zhang, Danyang Zhao, Xiao Peng, Wanghongan Jia, Huitao An, Mingming Xin, Yingyin Yao, Weilong Guo, Huiru Peng, Chaojie Xie, Zhongfu Ni, Qixin Sun, Zhaorong Hu (2026) Genomic and genetic dissection of drought tolerance in a resilient wheat germplasm JIN50 , Nature Genetics , 58(6):1423–1433.
DOI: 10.1038/s41588-026-02596-w

107. Nannan Liu, Wenxin Wei, Junna Sun, Zuhuan Yang, Wei Pan, Xiaoming Xie, Jiazheng Yu, Jiarui Zhang, Boyuan Zhang, Weilong Guo, Yinghui Li, Qixin Sun, Jun Ma, Chaojie Xie (2026) Fine mapping of the TdHLS gene controlling hairy leaf sheath from wild emmer wheat , Theoretical and Applied Genetics , 139(5):145.
DOI: 10.1007/s00122-026-05231-8

106. Junna Sun, Wei Pan, Wenxin Wei, Nannan Liu, Zuhuan Yang, Junyu Ma, Muhammad Saqlain, Siqi Chen, Jiarui Zhang, Boyuan Zhang, Yinghui Li, Jinying Gou, Weilong Guo, Qixin Sun, Huagang He, Chaojie Xie, Jun Ma (2026) Identification and validation of a functional allele of the powdery mildew resistance gene Pm68 derived from the wild emmer wheat introgression line R53M , The Crop Journal , 14(4):1287-1297.
DOI: 10.1016/j.cj.2026.03.013

105. Xiaoming Xie *, Peng Zhao *, Yuqi Zhang, Wenxi Wang, Zihao Wang, Zhaoxing Yu, Zhe Chen, Baoyue Zhang, Mingming Xin, Zhongfu Ni, Qixin Sun, Weilong Guo # (2026) Beyond the Data: Artificial Intelligence, Knowledge Graphs, and the Next Revolution in Wheat Breeding , Plant Communications ,7(5):101841.
DOI: 10.1016/j.xplc.2026.101841

104. Runqi Zhang, Guoyu Liu, Shanshan Zhai, Xinhao Meng, Jiazheng Yu, Yuqi Zhang, Shidian Wen, Xinghua Luo, Wenxuan Han, Hongyao Lou, Tianjiao Shao, Rongqi Liang, Jun Ma, Huijie Zhai, Mingshan You, Chaojie Xie, Yufeng Zhang, Jie Liu, Zhaorong Hu, Weilong Guo, Qixin Sun, Jiewen Xing, Zhongfu Ni，Baoyun Li (2026) TaHST2 silencing shapes basal heat tolerance in allohexaploid wheat , Nature Plants, 12(4):767-779.
DOI: 10.1038/s41477-026-02257-0

103. Junna Sun, Wei Pan, Yuqi Zhang, Wenxin Wei, Nannan Liu, Zuhuan Yang, Jiarui Zhang, Boyuan Zhang, Jinying Gou, Weilong Guo, Qixin Sun, Chaojie Xie, Jun Ma (2026) Identification and cloning of the TdBa controlling black awn color in durum wheat (Triticum durum Desf.) , Journal of Integrative Agriculture , ##(##):##.
DOI: 10.1016/j.jia.2026.03.021

2025

102. Yongming Chen, Yiwen Guo, Mengsi Ma, Yongfa Wang, Weilong Guo, Zhaorong Hu, Mingming Xin, Yingyin Yao, Zhongfu Ni, Qixin Sun, Huiru Peng (2025) Translational regulation plasticity shapes wheat grain adaptation to heat stress , Genome Biology , 26(1):382.
DOI: 10.1186/s13059-025-03848-4

101. Yaping Wang, Lingfeng Miao, Haibin Wu, Xiaoliang Duan, Liu Chang, Yu Hong, Weilong Guo, Hui Sun (2025) The dynamic epigenetic atlas and its effects on instability of starch and seed storage protein quality traits in wheat (Triticum aestivum L.) , Frontiers in Plant Science , 16:1–19.
DOI: 10.3389/fpls.2025.1685120

100. Hongjian Yu, Tianyu Lan, Weiwei Mao, Yongfa Wang, Xiaoyu Zhang, Mengsi Ma, Shuo Chen, Guang Chen, Qiang Li, Zhaorong Hu, Mingming Xin, Yingyin Yao, Weilong Guo, Zhongfu Ni, Qixin Sun, Huiru Peng (2025) Natural Variation in TaFAD8-D Promoter Enhances Thermotolerance in Wheat Through Fatty Acid and Lipid Remodelling , Plant Biotechnology Journal , 24(3):1251-1268.
DOI: 10.1111/pbi.70397

99. Zuhuan Yang, Nannan Liu, Xiaoming Xie, Wenxin Wei, Yuhan Bai, Junna Sun, Wei Pan, Jiatian Yang, Weidong Wang, Xiaodong Xie, Muhammad Saqlain, Houyang Kang, Baoyun Li, Zhaorong Hu, Jinying Gou, Weilong Guo , Susheng Song, Jun Ma, Tzion Fahima, Qixin Sun, Lina Qiu, Yinghui Li, Chaojie Xie (2025) Two complementary NLRs from wild emmer wheat confer powdery mildew resistance , Nature Communications , 16(1):9041.
DOI: 10.1038/s41467-025-64052-3

98. Weiya Xu, Yongming Chen, Yanxiao Niu, Bin Liu, Dejie Du, Xining Ning, Tong Huan, Yilan Zhou, Wensheng Ke, Lingfeng Miao, Weilong Guo , Mingming Xin, Yingyin Yao, Huiru Peng, Mingshan You, Zhongfu Ni, Qixin Sun, Jiewen Xing (2025) An incoherent feed-forward loop coordinates nitrate uptake and tillering in wheat , Molecular Plant , 18(11):1881-1900.
DOI: 10.1016/j.molp.2025.09.020

97. Zhaoheng Zhang, Xuelei Lin, Jingjing Yue, Yongxin Xu, Lingfeng Miao, Wenqiang Tang, Weilong Guo , Jun Xiao (2025) Reshaping epigenomic landscapes facilitated bread wheat speciation , Plant Physiology , 199(1):kiaf399.
DOI: 10.1093/plphys/kiaf399

★96. Xiaojiang Guo*, Zhe Chen*, Xin Liu, Lingfeng Miao, Yongming Chen, Yingyin Yao, Jinkun Du, Qixin Sun, Zhongfu Ni#, Jirui Wang#, Weilong Guo# (2025) Dynamic regulation and embryo-endosperm crosstalk revealed by whole transcriptome profiling of wheat seed development , Cell Reports , 44(9):116195.
DOI: 10.1016/j.celrep.2025.116195

95. Xingbei Liu, Jinpeng Li, Chenji Zhang, Danyang Zhao, Xiao Peng, Qun Yang, Zehui Liu, Lingfeng Miao, Wei Chu, Jingchen Lin, Shumin Chang, Debiao Liu, Xiaoyu Liu, Wenxi Wang, Xiaobo Wang, Mingming Xin, Yingyin Yao, Weilong Guo, Xiaodong Xie, Huiru Peng, Zhongfu Ni, Qixin Sun, Zhaorong Hu (2025) An elite allele TaDT1-A^hapI enhances drought tolerance via mediating autophagic pathways in wheat , Nature Communications , 16(1):6563.
DOI: 10.1038/s41467-025-61943-3

94. Wensheng Ke, Yidi Zhao, Yunjie Liu, Qun Yang, Zhaoyan Chen, Jinquan Guo, Ruizhao Wang, Weiya Xu, Dejie Du, Yufeng Zhang, Weilong Guo, Jie Liu, Mingming Xin, Zhaorong Hu, Huiru Peng, Yingyin Yao, Qixin Sun, Zhijian Chang, Zhongfu Ni, Jiewen Xing (2025) The B1–TaHDA6 module negatively regulates root hair length through reactive oxygen species homeostasis in wheat , The Plant Cell , 37(7):#-#.
DOI: 10.1093/plcell/koaf174

93. Haoran Li, Zhen Qin, Xiaoli Geng, Jie Cao, Xinyang Yuan, Huiru Peng, Yingyin Yao, Zhaorong Hu, Weilong Guo, Yumei Zhang, Jie Liu, Vincenzo Rossi, Ive De Smet, Zhongfu Ni, Qixin Sun, Mingming Xin (2025) TaIRE1‐mediated unconventional splicing of the TabZIP60 mRNA and the miR172 precursor regulates heat stress tolerance in wheat, Journal of Integrative Plant Biology , 67(9):2388-2400.
DOI: 10.1111/jipb.13963

92. Zhenzhen Zhu, Xuecheng Zhu, Na Zhang, Wenxi Wang, Jilu Liu, Fuping Zhang, Xiaomeng Ren, Yanpeng Ding, Fangyao Sun, Xi He, Sijia Hu, Xiuhua Li, Shurong Wei, Weilong Guo, Zhongfu Ni, Qixin Sun, Dongtao Liu, Zhenqi Su (2025) Identification and validation of a major QTL, QFhb‑6AL, for Fusarium head blight resistance on chromosome 6AL in wheat, Theoretical and Applied Genetics , 138(4):74.
DOI: 10.1007/s00122-025-04864-5

91. Hongxia Liu, Tian Li, Jian Hou, Xiaotong Yin, Yuquan Wang, Xuemei Si, Shoaib Ur Rehman, Lei Zhuang, Weilong Guo, Chenyang Hao, Xueyong Zhang (2025) DTaWUS-like-5D affects grain weight and filling by inhibiting the expression of sucrose and trehalose metabolism-related genes in wheat grain endosperm, Plant Biotechnology Journal , 23(6):2018-2033.
DOI: 10.1111/pbi.70015

90. Jing Liu, Chaoqun Dong, Xiangqing Liu, Jinquan Guo, Lingling Chai, Weilong Guo, Zhongfu Ni, Qixin Sun, Jie Liu. (2025) Decoupling the pleiotropic effects of VRT-A2 during reproductive development enhances wheat grain length and weight, The Plant Cell, 37(2):koaf024.
DOI: 10.1093/plcell/koaf024

89. Zijian Wang, Lingfeng Miao, Kaiwen Tan, Weilong Guo, Beibei Xin, Rudi Appels, Jizeng Jia, Jinsheng Lai, Fei Lu, Zhongfu Ni, Xiangdong Fu, Qixin Sun, Jian Chen. (2025) Near-complete assembly and comprehensive annotation of the wheat Chinese Spring genome, Molecular Plant, 18(5):892-907. (# Corresponding Authors)
DOI: 10.1016/j.molp.2025.02.002
[Resource: CS-CAU genome]

88. Yidi Zhao, Zhengwei Huang, Ximeng Zhou, Wan Teng, Zehua Liu, Wenping Wang, Shengjia Tang, Ying Liu, Jing Liu, Wenxi Wang, Lingling Chai, Na Zhang, Weilong Guo, Jie Liu, Zhongfu Ni, Qixin Sun, Yanpeng Wang, Yuan Zong。 (2025) Precise deletion, replacement and inversion of large DNA fragments in plants using dual prime editing, Nature Plants, 11(2):191-205.
DOI: 10.1038/s41477-024-01898-3
[Server: DualPE_Finder]

★87. Yingyin Yao *, Weilong Guo *, Jinying Gou *, Zhaorong Hu, Jie Liu, Jun Ma, Yuan Zong, Mingming Xin, Wei Chen, Qiang Li, Zihao Wang, Ruijie Zhang, Cristobal Uauy, Faheem Shehzad Baloch, Zhongfu Ni #, Qixin Sun #. (2025) Wheat2035: Integrating Pan-omics and Advanced Biotechnology for Future Wheat Design, Molecular Plant, 18(2):272-297. (* Co-first Authors, # Corresponding Authors)
DOI: 10.1016/j.molp.2025.01.005
(Perspective)
[Resource: WGC / Wheat Genomics Collections ]

★86. Hao Wang *, Shen Yan *, Wenxi Wang *, Yongming Cheng, Jingpeng Hong, Qiang He, Xianmin Diao, Yunan Lin, Yanqing Chen, Yongsheng Cao #, Weilong Guo #, Wei Fang #. (2025) Cropformer: An Interpretable Deep Learning Framework for Crop Genomic Prediction, Plant Communications, 6(3):101223. (# Corresponding Authors)
DOI: 10.1016/j.xplc.2024.101223
[Software: Cropformer]

★85. Chengzhi Jiao *, Xiaoming Xie *, Chenyang Hao *, Liyang Chen *, Yuxin Xie, Vanika Garg, Li Zhao, Zihao Wang, Yuqi Zhang, Tian Li, Junjie Fu, Annapurna Chitikineni, Jian Hou, Hongxia Liu, Girish Dwivedi, Xu Liu, Jizeng Jia, Long Mao, Xiue Wang, Rudi Appels, Rajeev K. Varshney #, Weilong Guo #, Xueyong Zhang #. (2025) Pan-genome bridges wheat structural variations with habitat and breeding, Nature, 637(8045):384-393. (# Corresponding Authors)
DOI: 10.1038/s41586-024-08277-0

84. Renhan Li, Jie Liu, Lingling Chai, Dejie Du, Wen Yang, Jun Zhu, Yaotian Gao, Yunjie Liu, Lingfeng Miao, Long Song, Xiaoming Xie, Yongming Chen, Zhaoheng Zhang, Pei Ni, Yidi Zhao, Zhaoju Li, Lahu Lu, Weilong Guo, Huiru Peng, Qixin Sun, Zhongfu Ni (2025) A natural variation of TaERF-A1 encoding an AP2/ERF transcription factor confers semidwarf plant architecture and increased lodging resistance in wheat, Plant Communications, 6(3):101194.
DOI: 10.1016/j.xplc.2024.101194

2024

83. Xiaoyu Zhang, Yongfa Wang, Yongming Chen, Yazhou Li, Kai Guo, Jin Xu, Panfeng Guan, Tianyu Lan, Mingming Xin, Zhaorong Hu, Weilong Guo, Yingyin Yao, Zhongfu Ni, Qixin Sun, Ming Hao, Huiru Peng (2024) Partial unidirectional translocation from 5AL to 7BS leads to dense spike in an EMS-induced wheat mutant, BMC Genomics, 25(1):1073.
DOI: 10.1186/s12864-024-11000-y

★82. Lingfeng Miao, Zhe Chen, Lifeng Gao, Jizeng Jia, Weilong Guo #, Guangyao Zhao #. (2024) Integrated multi-omics reveals contrasting epigenetic patterns in leaf and root morphogenesis in Aegilops speltoides, The Crop Journal, 13(1):292-298. (# Corresponding Authors)
DOI: 10.1016/j.cj.2024.09.015

★81. Zihao Wang, Wenxi Wang, Yachao He, Xiaoming Xie, Zhengzhao Yang, Xiaoyu Zhang, Jianxia Niu, Huiru Peng, Yingyin Yao, Chaojie Xie, Mingming Xin, Zhaorong Hu, Qixin Sun, Zhongfu Ni #, Weilong Guo #. (2024) On the evolution and genetic diversity of bread wheat D genome, Molecular Plant, 17(11):1672-1686. (# Corresponding Authors)
DOI: 10.1016/j.molp.2024.09.007

80. Dejie Du, Zhaoju Li, Jun Yuan†, Fei He, Xiongtao Li, Naijiao Wang, Renhan Li, Wensheng Ke, Dongxue Zhang, Zhaoyan Chen, Zihao Jiang, Yunjie Liu, Lingling Chai, Jie Liu, Zhaorong Hu, Weilong Guo, Huiru Peng, Yingyin Yao, Qixin Sun, Zhongfu Ni, Mingming Xin. (2024) The TaWAK2-TaNAL1-TaDST pathway regulates leaf width via cytokinin signaling in wheat, Science Advances, 10(35):eadp5541.
DOI: 10.1126/sciadv.adp5541

★79. Jianxia Niu *, Wenxi Wang *, Zihao Wang *, Zhe Chen, Xiaoyu Zhang, Zhen Qin, Lingfeng Miao, Zhengzhao Yang, Chaojie Xie, Mingming Xin, Huiru Peng, Yingyin Yao, Jie Liu, Zhongfu Ni, Qixin Sun #, Weilong Guo #. (2024) Tagging large CNV blocks in wheat boosts digitalization of germplasm resources by ultra-low-coverage sequencing, Genome Biology, 25(1):171. (# Corresponding Authors)
DOI: 10.1186/s13059-024-03315-6
[Database: WheatCNVb]

★78. Wenxi Wang *, Zhe Chen, Zhengzhao Yang, Zihao Wang, Jilu Liu, Jie Liu, Huiru Peng, Zhenqi Su, Zhongfu Ni, Qixin Sun, Weilong Guo #(2024) lcQTH: rapid quantitative trait mapping through tracing parental haplotype with ultra-low-coverage sequencing, Plant Communications, 5(10):101008. (# Corresponding Authors)
DOI: 10.1016/j.xplc.2024.101008
[Software: lcQTH]

★77. Zhaoheng Zhang *, Dan Liu *, Binyong Li, Wenxi Wang, Jize Zhang, Mingming Xin, Zhaorong Hu, Jie Liu, Jinkun Du, Huiru Peng, Chenyang Hao, Xueyong Zhang, Zhongfu Ni, Qixin Sun, Weilong Guo #, Yingyin Yao #. (2024) A k-mer-based pangenome approach for cataloging seed-storage-protein genes in wheat to facilitate genotype-to-phenotype prediction and improvement of end-use quality, Molecular Plant, 17(7):1038-1053. (# Corresponding Authors)
DOI: 10.1016/j.molp.2024.05.006
[Software: PanSK]

76. Zhaoyan Chen, Xuanshuang Li, Fei He, Bin Liu, Weiya Xu, Lingling Chai, Xuejiao Cheng, Long Song, Weilong Guo, Zhaorong Hu, Zhenqi Su, Jie Liu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Jiewen Xing, Zhongfu Ni. (2024) Positional cloning and characterization reveal the role of TaSRN-3D and TaBSR1 in the regulation of seminal root number in wheat, New Phytologist, 242(6):2510-2523.
DOI: 10.1111/nph.19740

75. Weiwei Mao, Xiaobo Wang, Yongming Chen, Yongfa Wang, Liang Ma, Xiaoming Xie, Xiaojia Wu, Jin Xu, Yuqi Zhang, Yue Zhao, Xuejun Tian, Weilong Guo, Zhaorong Hu, Mingming Xin, Yingyin Yao, Zhongfu Ni, Qixin Sun, Huiru Peng. (2024) Map-based cloning and characterization reveal that an R2R3 MYB gene confers red glume in wheat, The Crop Journal, 13(3):887-899.
DOI: 10.1016/j.cj.2024.03.002

74. Jinpeng Li, Xingbei Liu, Shumin Chang, Wei Chu, Jingchen Lin, Hui Zhou, Zhuoran Hu, Mancang Zhang, Mingming Xin, Yingyin Yao, Weilong Guo, Xiaodong Xie, Huiru Peng, Zhongfu Ni, Qixin Sun, Yu Long, Zhaorong Hu. (2024) The potassium transporter TaNHX2 interacts with TaGAD1 to promote drought tolerance via modulating stomatal aperture in wheat, Science Advances, 10(15):eadk4027.
DOI: 10.1126/sciadv.adk4027

73. Wei Chu, Shumin Chang, Jingchen Lin, Chenji Zhang, Jinpeng Li, Xingbei Liu, Zehui Liu, Debiao Liu, Qun Yang, Danyang Zhao, Xiaoyu Liu, Weilong Guo, Mingming Xin, Yingyin Yao, Huiru Peng, Chaojie Xie, Zhongfu Ni, Qixin Sun, Zhaorong Hu. (2024) Methyltransferase TaSAMT1 mediates wheat freezing tolerance by integrating brassinosteroid and salicylic acid signaling, The Plant Cell, 36(7):2607-2628.
DOI: 10.1093/plcell/koae100

★72. Yongfa Wang *, Zihao Wang *, Yongming Chen, Tianyu Lan, Xiaobo Wang, Gang Liu, Mingming Xin, Zhaorong Hu, Yingyin Yao, Zhongfu Ni, Qixin Sun, Weilong Guo #, Huiru Peng #. (2024) Genomic insights into the origin and evolution of spelt (Triticum spelta L.) as a valuable gene pool for modern wheat breeding, Plant Communications, 5(5):100883. (# Corresponding Authors)
DOI: 10.1016/j.xplc.2024.100883

71. Wenxin Wei, Nannan Liu, Shengnan Zhang, Jing Zhang, Wei Pan, Xiaoming Xie, Zuhuan Yang, Junna Sun, Jun Ma, Zhaorong Hu, Weilong Guo, Qiaoling Luo, Jingzhong Xie, Fei He, Yinghui Li, Chaojie Xie, Qixin Sun. (2024) Mapping of powdery mildew resistance genes transferred to common wheat from wild emmer wheat revealed three functional Pm60 haplotypes, The Crop Journal, 12(2):540-548.
DOI: 10.1016/j.cj.2024.01.015

70. Jie Cao, Zhen Qin, Guangxian Cui, Zhaoyan Chen, Xuejiao Cheng, Huiru Peng, Yingyin Yao, Zhaorong Hu, Weilong Guo, Zhongfu Ni, Qixin Sun, Mingming Xin. (2024) Natural variation of STKc_GSK3 kinase TaSG- D1 contributes to heat stress tolerance in Indian dwarf wheat, Nature Communications, 15:2097.
DOI: 10.1038/s41467-024-46419-0

★69. Lingfeng Miao *, Weiya Xu *, Yanhong Liu, Xiangyi Huang, Zhe Chen, Huifang Wang, Zihao Wang, Yongming Chen, Qingxin Song, Jing Zhang, Fangpu Han, Huiru Peng, Yingyin Yao, Mingming Xin, Zhaorong Hu, Zhongfu Ni, Qixin Sun, Jiewen Xing #, Weilong Guo #. (2024) Reshaped DNA methylation cooperating with homoeolog- divergent expression promotes improved root traits in synthesized tetraploid wheat, New Phytologist, 242(2):507-523. (# Corresponding Authors)
DOI: 10.1111/nph.19593

★68. Yongming Chen *, Wenxi Wang *, Zhengzhao Yang, Huiru Peng, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2024) Innovative computational tools provide new insights into the polyploid wheat genome, aBIOTECH, 5(1):52-70. (# Corresponding Authors)
DOI: 10.1007/s42994-023-00131-7
(Review)
[Resource: Tutorial page]

67. Yuzhi Zhu, Zijie Wang, Zanchen Zhou, Yuting Liu, Xiang Gao, Weilong Guo, Junpeng Shi (2024) HEMU: an integrated comparative genomics database and analysis platform for Andropogoneae grasses, Plant Communications, 5(4):100786.
DOI: 10.1016/j.xplc.2023.100786

66. Jianing Zhang, Zhaoheng Zhang, Ruijie Zhang, Changfeng Yang, Xiaobang Zhang, Siyuan Chang, Qian Chen, Vincenzo Rossi, Long Zhao, Jun Xiao, Mingming Xin, Jinkun Du, Weilong Guo, Zhaorong Hu, Jie Liu, Huiru Peng, Zhongfu Ni, Qixin Sun, Yingyin Yao (2024) Type I MADS-box transcription factor TaMADS-GS regulates grain size by stabilizing cytokinin signalling during endosperm cellularization in wheat, Plant Biotechnology Journal, 22(1):200-215.
DOI: 10.1111/pbi.14180

2023

65. Wenjia Zhang, Zhaoheng Zhang, Qian Chen, Zihao Wang, Wanjun Song, Kai Yang, Mingming Xin, Zhaorong Hu, Jie Liu, Huiru Peng, Jinsheng Lai, Weilong Guo, Zhongfu Ni, Qixin Sun, Jinkun Du, Yingyin Yao (2023) Mutation of a highly conserved amino acid in RPM1 causes leaf yellowing and premature senescence in wheat, Theoretical and Applied Genetics, 136(12):254.
DOI: 10.1007/s00122-023-04499-4

64. Xiongtao Li, Beilu Cao, Dejie Du, Long Song, Lulu Tian, Xiaoming Xie, Zhaoyan Chen, Yanpeng Ding, Xuejiao Cheng, Yingyin Yao, Weilong Guo, Zhenqi Su, Qixin Sun, Zhongfu Ni, Lingling Chai, Jie Liu (2023) TaACTIN7-D regulates plant height and grain shape in bread wheat, Journal of Genetics and Genomics, 50(11):895-908.
DOI: 10.1016/j.jgg.2023.09.001

63. Weiya Xu, Yongming Chen, Bin Liu, Qiuyuan Li, Yilan Zhou, Xuanshuang Li, Weilong Guo, Zhaorong Hu, Zhenshan Liu, Mingming Xin, Yingyin Yao, Mingshan You, Huiru Peng, Zhongfu Ni, Jiewen Xing (2023) TaANR1-TaMADS25 module regulates lignin biosynthesis and root development in wheat (Triticum aestivum L.), Journal of Genetics and Genomics, 50(11):917-920.
DOI: 10.1016/j.jgg.2023.08.011

★62. Zihao Wang, Lingfeng Miao, Yongming Chen, Huiru Peng, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2023) Deciphering the evolution and complexity of wheat germplasm from a genomic perspective, Journal of Genetics and Genomics, 50(11):846-860. (# Corresponding Authors)
DOI: 10.1016/j.jgg.2023.08.002
(Review)

★61. Zhaoheng Zhang *, Ruijie Zhang *, Fengfan Meng, Yongming Chen, Wenxi Wang, Kai Yang, Yujiao Gao, Mingming Xin, Jinkun Du, Zhaorong Hu, Zhongfu Ni, Qixin Sun, Weilong Guo #, Yingyin Yao #. (2023) A comprehensive atlas of long non-coding RNAs provides insight into grain development in wheat, Seed Biology, 2:12. (# Corresponding Authors)
DOI: 10.48130/SeedBio-2023-0012
[Database: wLNCdb]

60. Haoran Wang, Man Feng, Yujie Jiang, Dejie Du, Chaoqun Dong, Zhaoheng Zhang, Wenxi Wang, Jing Liu, Xiangqing Liu, Sufang Li, Yongming Chen, Weilong Guo, Mingming Xin, Yingyin Yao, Zhongfu Ni, Qixin Sun, Huiru Peng, Jie Liu (2023) Thermosensitive SUMOylation of TaHsfA1 defines a dynamic ON/OFF molecular switch for the heat stress response in wheat, The Plant Cell, koad192.
DOI: 10.1093/plcell/koad192

★59. Yongming Chen, Yiwen Guo, Xiaoming Xie, Zihao Wang, Lingfeng Miao, Zhengzhao Yang, Yuannian Jiao, Chaojie Xie, Jie Liu, Zhaorong Hu, Mingming Xin, Yingyin Yao, Zhongfu Ni, Qixin Sun, Huiru Peng #, Weilong Guo #. (2023) Pangenome-based trajectories of intracellular gene transfers in Poaceae unveil high cumulation in Triticeae, Plant Physiology, 193(1):578-594. (# Corresponding Authors)
DOI: 10.1093/plphys/kiad319
[Software: IGTminer]
[Database: pNOGmap]

★58. Dawa Dondup *, Yang Yang *, Dongdong Xu *, Lhundrup Namgyal, Zihao Wang, Xia Shen, Tsechoe Dorji, Nyima kyi, Lhakpa Drolma, Liyun Gao, Zhuo Ga, Zha Sang, Zhuo Ga, Wang Mu, Pubu Zhuoma, Xiongnu Taba, Guocheng Jiao, Wenhua Liao, Yawei Tang, Xingquan Zeng, Zhaxi Luobu, Yufeng Wu, Chunchao Wang, Jing Zhang, Zengjun Qi #, Weilong Guo #, Ganggang Guo #. (2023) Genome diversity and highland-adaptative variation in Tibet barley landrace population of China, Frontiers in Plant Science, 14:1189642. (# Corresponding Authors; * Joint First Authors)
DOI: 10.3389/fpls.2023.1189642

57. Long Song, Jie Liu, Beilu Cao, Bin Liu, Xiaoping Zhang, Zhaoyan Chen, Chaoqun Dong, Xiangqing Liu, Zhaoheng Zhang, Wenxi Wang, Lingling Chai, Jing Liu, Jun Zhu, Shubin Cui, Fei He, Huiru Peng, Zhaorong Hu, Zhenqi Su, Weilong Guo, Mingming Xin, Yingyin Yao, Yong Yan, Yinming Song, Guihua Bai, Qixin Sun, Zhongfu Ni. (2023) Reducing brassinosteroid signalling enhances grain yield in semi-dwarf wheat, Nature, 617(7959):118-124.
DOI: 10.1038/s41586-023-06023-6

★56. Zhichao Yu *, Yongming Chen *, Yong Zhou *, Yulu Zhang, Mengyuan Li, Yidan Ouyang, Dmytro Chebotarov, Ramil Mauleon, Hu Zhao, Weibo Xie, Kenneth L. McNally, Rod A. Wing #, Weilong Guo #, Jianwei Zhang #. (2023) Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice, Molecular Plant, 16(5):798-801. (# Corresponding Authors; * Joint First Authors)
DOI: 10.1016/j.molp.2023.03.012

55. Xiaobo Wang, Jinbo Zhang, Weiwei Mao, Panfeng Guan, Yongfa Wang, Yongming Chen, Wangqing Liu, Weilong Guo, Yingyin Yao, Zhaorong Hu, Mingming Xin, Zhongfu Ni, Qixin Sun, Huiru Peng. (2023) Association mapping identifies loci and candidate genes for grain-related traits in spring wheat in response to heat stress, Plant Science, 331:111676.
DOI: 10.1016/j.plantsci.2023.111676

54. Wensheng Ke, Jiewen Xing, Zhaoyan Chen, Yidi Zhao, Weiya Xu, Lulu Tian, Jinquan Guo, Xiaoming Xie, Dejie Du, Zihao Wang, Yufeng Li, Jin Xu, Mingming Xin, Weilong Guo, Zhaorong Hu, Zhenqi Su, Jie Liu, Huiru Peng, Yingyin Yao, Qixin Sun, Zhongfu Ni. (2023) The TaTCP4/10-B1 cascade regulates awn elongation in wheat (Triticum aestivum L.), Plant Communications, 4(4):100590.
DOI: 10.1016/j.xplc.2023.100590

53. Yiwen Guo, Yongming Chen, Yongfa Wang, Xiaojia Wu, Xiaoyu Zhang, Weiwei Mao, Hongjian Yu, Kai Guo, Jin Xu, Liang Ma, Weilong Guo, Zhaorong Hu, Mingming Xin, Yingyin Yao, Zhongfu Ni, Qixin Sun, Huiru Peng. (2023) The translational landscape of bread wheat during grain development, The Plant Cell, 35(6):1848-1867.
DOI: 10.1093/plcell/koad075

52. Guoyu Liu, Runqi Zhang, Sen Li, Rehmat Ullah, Fengping Yang, Zihao Wang, Weilong Guo, Mingshan You, Baoyun Li, Chaojie Xie, Liangsheng Wang, Jie Liu, Zhongfu Ni, Qixin Sun, Rongqi Liang. (2023) TaMADS29 interacts with TaNF-YB1 to synergistically regulate early grain development in bread wheat, SCIENCE CHINA Life Sciences, 66(7):1647-1664.
DOI: 10.1007/s11427-022-2286-0

51. Hongxia Liu, Xuemei Si, Zhenyu Wang, Liangjing Cao, Lifeng Gao, Xiaolong Zhou, Wenxi Wang, Ke Wang, Chengzhi Jiao, Lei Zhuang, Yunchuan Liu, Jian Hou, Tian Li, Chenyang Hao, Weilong Guo, Jun Liu, Xueyong Zhang. (2023) TaTPP-7A positively feedback regulates grain filling and wheat grain yield through T6P-SnRK1 signaling pathway and sugar-ABA interaction, Plant Biotechnology Journal, 21(6):1159-1175.
DOI: 10.1111/pbi.14025

50. Dan Liu, Huaimao Yang, Zhaoheng Zhang, Qian Chen, Weilong Guo, Vincenzo Rossi, Mingming Xin, Jinkun Du, Zhaorong Hu, Jie Liu, Huiru Peng, Zhongfu Ni, Qixin Sun, Yingyin Yao. (2023) An elite γ-gliadin allele improves end-use quality in wheat, New Phytologist, 239(1):87-101.
DOI: 10.1111/nph.18722

★49. Yongming Chen *, Yiwen Guo *, Panfeng Guan, Yongfa Wang, Xiaobo Wang, Zihao Wang, Zhen Qin, Shengwei Ma, Mingming Xin, Zhaorong Hu, Yingyin Yao, Zhongfu Ni, Qixin Sun, Weilong Guo # , Huiru Peng #. (2023) A wheat integrative regulatory network from large-scale complementary functional datasets enables trait-associated gene discovery for crop improvement, Molecular Plant, 16(2):393-414. (# Corresponding Authors; * Joint First Authors)
DOI: 10.1016/j.molp.2022.12.019
[Database: wGRN]

2022

48. Mei Zheng, Jinpeng Li, Chaowu Zeng, Xingbei Liu, Wei Chu, Jingchen Lin, Fengzhi Wang, Weiwei Wang, Weilong Guo, Mingming Xin, Yingyin Yao, Huiru Peng, Zhongfu Ni, Qixin Sun, Zhaorong Hu. (2022) Subgenome-biased expression and functional diversification of a Na+/H+ antiporter homoeologs in salt tolerance of polyploid wheat, Frontiers in Plant Science, 13:1072009.
DOI: 10.3389/fpls.2022.1072009

47. Changfeng Yang, Qian Chen, Mingming Xin, Zhenqi Su, Jinkun Du, Weilong Guo, Zhaorong Hu, Jie Liu, Huiru Peng, Zhongfu Ni, Qixin Sun, Yingyin Yao. (2022) A highly conserved amino acid in high molecular weight glutenin subunit 1Dy12 contributes to gluten functionality and processing quality in wheat, Journal of Genetics and Genomics, 50(11):909-912.
DOI: 10.1016/j.jgg.2022.11.002

46. Siyuan Chang, Qian Chen, Tao Yang, Binyong Li, Mingming Xin, Zhenqi Su, Jinkun Du, Weilong Guo, Zhaorong Hu, Jie Liu, Huiru Peng, Zhongfu Ni, Qixin Sun, Yingyin Yao. (2022) Pinb-D1p is an elite allele for improving end-use quality in wheat (Triticum aestivum L.), Theoretical and Applied Genetics , 135(12):4469–4481.
DOI: 10.1007/s00122-022-04232-7

45. Jun Xiao, Bao Liu, Yingyin Yao, Zifeng Guo, Haiyan Jia, Lingrang Kong, Aimin Zhang, Wujun Ma, Zhongfu Ni, Shengbao Xu, Fei Lu, Yuannian Jiao, Wuyun Yang, Xuelei Lin, Silong Sun, Zefu Lu, Lifeng Gao, Guangyao Zhao, Shuanghe Cao, Qian Chen, Kunpu Zhang, Mengcheng Wang, Meng Wang, Zhaorong Hu, Weilong Guo, Guoqiang Li, Xin Ma, Junming Li, Fangpu Han, Xiangdong Fu, Zhengqiang Ma, Daowen Wang, Xueyong Zhang, Hong-Qing Ling, Guangmin Xia, Yiping Tong, Zhiyong Liu, Zhonghu He, Jizeng Jia, Kang Chong. (2022) Wheat genomic study for genetic improvement of traits in China, Science China Life Sciences, 65(9):1718–1775.
DOI: 10.1007/s11427-022-2178-7

44. Na Song, Jingchen Lin, Xingbei Liu, Zehui Liu, Debiao Liu, Wei Chu, Jinpeng Li, Yongming Chen, Shumin Chang, Qun Yang, Xiaoyu Liu, Weilong Guo, Mingming Xin, Yingyin Yao, Huiru Peng, Zhongfu Ni, Chaojie Xie, Qixin Sun, Zhaorong Hu. (2022) Histone acetyltransferase TaHAG1 interacts with TaPLATZ5 to activate TaPAD4 expression and positively contribute to powdery mildew resistance in wheat, New Phytologist, 236(2):590-607.
DOI: 10.1111/nph.18372

43. Jingchen Lin, Na Song, Debiao Liu, Xingbei Liu, Wei Chu, Jinpeng Li, Shumin Chang, Zehui Liu, Yongming Chen, Qun Yang, Xiaoyu Liu, Yingyin Yao, Weilong Guo, Mingming Xin, Huiru Peng, Zhongfu Ni, Qixin Sun, Zhaorong Hu. (2022) Histone acetyltransferase TaHAG1 interacts with TaNACL to promote heat stress tolerance in wheat, Plant Biotechnology Journal, 20(9):1645-1647.
DOI: 10.1111/pbi.13881

★42. Zihao Wang, Wenxi Wang, Xiaoming Xie, Yongfa Wang, Zhengzhao Yang, Huiru Peng, Mingming Xin, Yingyin Yao, Zhaorong Hu, Jie Liu, Zhenqi Su, Chaojie Xie, Baoyun Li, Zhongfu Ni, Qixin Sun #, Weilong Guo #. (2022) Dispersed emergence and protracted domestication of polyploid wheat uncovered by mosaic ancestral haploblock inference, Nature Communications, 13:3891. (# Corresponding Author; * Joint First Authors)
DOI: 10.1038/s41467-022-31581-0
[Software: IntroBlocker]
[Behind The Paper: What makes wheat a successful major crop?]

41. Qian Chen, Changfeng Yang, Zhaoheng Zhang, Zihao Wang, Yongming Chen, Vincenzo Rossi, Wei Chen, Mingming Xin, Zhenqi Su, Jinkun Du, Weilong Guo, Zhaorong Hu, Jie Liu, Huiru Peng, Zhongfu Ni, Qixin Sun, Yingyin Yao. (2022) Unprocessed wheat γ-gliadin reduces gluten accumulation associated with the endoplasmic reticulum stress and elevated cell death, New Phytologist, 236(1):146-164.
DOI: 10.1111/nph.18316

★40. Zhengzhao Yang *, Zihao Wang *, Wenxi Wang *, Xiaoming Xie, Lingling Chai, Xiaobo Wang, Xibo Feng, Jinghui Li, Huiru Peng, Zhenqi Su, Mingshan You, Yingyin Yao, Mingming Xin, Zhaorong Hu, Jie Liu, Rongqi Liang, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2022) ggComp enables dissection of germplasm resources and construction of a multiscale germplasm network in wheat, Plant Physiology, 188(4):1950-1965. (# Corresponding Author; * Joint First Authors)
DOI: 10.1093/plphys/kiac029
[Software: ggComp]
[Database: WheatCompDB]

39. Lingling Chai, Mingming Xin, Chaoqun Dong, Zhaoyan Chen, Huijie Zhai, Junhong Zhuang, Xuejiao Cheng, Naijiao Wang, Jia Geng, Xiaobo Wang, Ruolin Bian, Yingyin Yao, Weilong Guo, Zhaorong Hu, Huiru Peng, Guihua Bai, Qixin Sun, Zhenqi Su, Jie Liu, Zhongfu Ni. (2022) A natural variation in Ribonuclease H-like gene underlies Rht8 to confer "Green Revolution" trait in wheat, Molecular Plant, 15(3):377-380.
DOI: 10.1016/j.molp.2022.01.013

38. Zhaoyan Chen, Wensheng Ke, Fei He, Lingling Chai, Xuejiao Cheng, Huanwen Xu, Xiaobo Wang, Dejie Du, Yidi Zhao, Xiyong Chen, Jiewen Xing, Mingming Xin, Weilong Guo, Zhaorong Hu, Zhenqi Su, Jie Liu, Huiru Peng, Yingyin Yao, Qixin Sun, Zhongfu Ni. (2022) A single nucleotide deletion in the third exon of FT-D1 increases the spikelet number and delays heading date in wheat (Triticum aestivum L.), Plant Biotechnology Journal, 20(5):920-933.
DOI: 10.1111/PBI.13773

2021

37. Shengwei Ma, Meng Wang, Jianhui Wu, Weilong Guo, Yongming Chen, Guangwei Li, Yanpeng Wang, Weiming Shi, Guangmin Xia, Daolin Fu, Zhensheng Kang, Fei Ni. (2021) WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat, Molecular Plant, 14(12):1965-1968.
DOI: 10.1016/j.molp.2021.10.006
[Database: WheatOmics]

36. Zhiyu Feng, Long Song, Wanjun Song, Zhongqi Qi, Jun Yuan, Run Li, Haiming Han, Huifang Wang, Zhaoyan Chen, Weilong Guo, Mingming Xin, Jie Liu, Zhaorong Hu, Huiru Peng, Yingyin Yao, Qixin Sun, Zhongfu Ni, Jiewen Xing. (2021) The decreased expression of GW2 homologous genes contributed to the increased grain width and thousand‑grain weight in wheat-Dasypyrum villosum 6VS·6DL translocation lines, Theoretical and Applied Genetics, 134(12):3873-3894.
DOI: 10.1007/s00122-021-03934-8

35. Xiang Gao, Weipeng Mo, Junpeng Shi, Ning Song, Pei Liang, Jian Chen, Yiting Shi, Weilong Guo, Xinchen Li, Xiaohong Yang, Beibei Xin, Haiming Zhao, Weibin Song, Jinsheng Lai. (2021) HITAC-seq enables high-throughput cost-effective sequencing of plasmids and DNA fragments with identity-tracked, Journal of Genetics and Genomics, 48(8):671-680.
DOI: 10.1016/j.jgg.2021.05.009

34. Qiang Zhang, Wenxin Wei, Xiangxi Zuansun, Shengnan Zhang, Chen Wang, Nannan Liu, Lina Qiu, Weidong Wang, Weilong Guo, Jun Ma, Huiru Peng, Zhaorong Hu, Qixin Sun, Chaojie Xie. (2021) Fine Mapping of the Leaf Rust Resistance Gene Lr65 in Spelt Wheat ‘Altgold’, Frontiers in Plant Science, 12:666921.
DOI: 10.3389/fpls.2021.666921

33. Lina Qiu, Nannan Liu, Huifang Wang, Xiaohan Shi, Feng Li, Qiang Zhang, Weidong Wang, Weilong Guo, Zhaorong Hu, Hongjie Li, Jun Ma, Qixin Sun, Chaojie Xie. (2021) Fine mapping of a powdery mildew resistance gene MlIW39 derived from wild emmer wheat (Triticum turgidum ssp. dicoccoides), Theoretical and Applied Genetics, 134(8):2469-2479.
DOI: 10.1007/s00122-021-03836-9

32. Jing Liu, Zhaoyan Chen, Zhihui Wang, Zhaoheng Zhang, Xiaoming Xie, Zihao Wang, Lingling Chai, Long Song, Xuejiao Cheng, Man Feng, Xiaobo Wang, Yanhong Liu, Zhaorong Hu, Jiewen Xing, Zhenqi Su, Huiru Peng, Mingming Xin, Yingyin Yao, Weilong Guo, Qixin Sun, Jie Liu, Zhongfu Ni. (2021) Ectopic expression of VRT-A2 underlies the origin of Triticum polonicum and Triticum petropavlovskyi with long outer glumes and grains, Molecular Plant, 14(9):1472-1488.
DOI: 10.1016/j.molp.2021.05.021

31. Dejie Du, Dongxue Zhang, Jun Yuan, Man Feng, Zhaoju Li, Zihao Wang, Zhaoheng Zhang, Xiongtao Li, Wensheng Ke, Renhan Li, Zhaoyan Chen, Lingling Chai, Zhaorong Hu, Weilong Guo, Jiewen Xing, Zhenqi Su, Huiru Peng, Mingming Xin, Yingyin Yao, Qixin Sun, Jie Liu, Zhongfu Ni. (2021) FRIZZY PANICLE defines a regulatory hub for simultaneously controlling spikelet formation and awn elongation in bread wheat, New Phytologist, 231(2):814-833.
DOI: 10.1111/nph.17388

30. Linghong Li, Lingling Chai, Huanwen Xu, Huijie Zhai, Tianya Wang, Mingyi Zhang, Mingshan You, Huiru Peng, Yingyin Yao, Zhaorong Hu, Mingming Xin, Weilong Guo, Qixin Sun, Xiyong Chen, Zhongfu Ni. (2021) Phenotypic characterization of the glossy1 mutant and fine mapping of GLOSSY1 in common wheat (Triticum aestivum L.), Theoretical and Applied Genetics, 134(3):835-847.
DOI: 10.1007/s00122-020-03734-6

29. Yujiao Gao, Kexin An, Weiwei Guo, Yongming Chen, Ruijie Zhang, Xue Zhang, Siyuan Chang, Vincenzo Rossi, Fangming Jin, Xinyou Cao, Mingming Xin, Huiru Peng, Zhaorong Hu, Weilong Guo, Jinkun Du, Zhongfu Ni, Qixin Sun, Yingyin Yao. (2021) The endosperm-specific transcription factor TaNAC019 regulates glutenin and starch accumulation and its elite allele improves wheat grain quality, The Plant Cell, 33(3):603-622.
DOI: 10.1093/plcell/koaa040

2020

28. Kuohai Yu, Man Feng, Guanghui Yang, Lv Sun, Zhen Qin, Jie Cao, Jingjing Wen, Haoran Li, Yan Zhou, Xiangping Chen, Huiru Peng, Yingyin Yao, Zhaorong Hu, Weilong Guo, Qixin Sun, Zhongfu Ni, Keith Adams, Mingming Xin. (2020) Changes in Alternative Splicing in Response to Domestication and Polyploidization in Wheat, Plant Physiology, 184(4):1955-1968.
DOI: 10.1104/pp.20.00773

★27. Yongming Chen, Wanjun Song, Xiaoming Xie, Zihao Wang, Panfeng Guan, Huiru Peng, Yuannian Jiao, Zhongfu Ni, Qixin Sun, Weilong Guo #. (2020) A Collinearity-incorporating Homology Inference Strategy for Connecting Emerging Assemblies in Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era, Molecular Plant, 13(12):1694-1708. (# Corresponding Author)
DOI: 10.1016/j.molp.2020.09.019
[Featured Article: (On The Cover) ]
[Software: GeneTribe]
[Database: Triticeae-GeneTribe / TGT]

★26. Weilong Guo *, Mingming Xin *, Zihao Wang *, Yingyin Yao, Zhaorong Hu, Wanjun Song, Kuohai Yu, Yongming Chen, Xiaobo Wang, Panfeng Guan, Rudi Appels, Huiru Peng #, Zhongfu Ni #, Qixin Sun #. (2020) Origin and adaptation to high altitude of Tibetan semi-wild wheat, Nature Communications, 11:5085. (# Corresponding Authors; * Joint First Authors)
DOI: 10.1038/s41467-020-18738-5
[Resource Homepage: Zang817_Genome]
[SnpHub server: SnpHub-NC20]

★25. Wenxi Wang *, Zihao Wang *, Xintong Li, Zhongfu Ni, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Weilong Guo #. (2020) SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat, GigaScience, 9(6):giaa060. (# Corresponding Author; * Joint First Authors)
DOI: 10.1093/gigascience/giaa060
[Software: SnpHub]
[Webserver: Wheat-SnpHub-Portal]

24. Lina Qiu, Huifang Wang, Yinghui Li, Weidong Wang, Yujia Liu, Junyi Mu, Miaomiao Geng, Weilong Guo, Zhaorong Hu, Jun Ma, Qixin Sun, Chaojie Xie. (2020) Fine Mapping of the Wheat Leaf Rust Resistance Gene LrLC10 (Lr13) and Validation of Its Co-segregation Markers, Frontiers in Plant Science, 11:470.
DOI: 10.3389/fpls.2020.00470

23. Feng Huang, Zhaoyan Chen, Dejie Du, Panfeng Guan, Lingling Chai, Weilong Guo, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Zhongfu Ni. (2020) Genome-wide linkage mapping of QTL for root hair length in a Chinese common wheat population, The Crop Journal, 8(6):1049-1056.
DOI: 10.1016/j.cj.2020.02.007

22. Jinghui Li, Shaozhe Wen, Chaofeng Fan, Minghu Zhang, Shuai Tian, Wenjing Kang, Wenxin Zhao, Chan Bi, Qiuyan Wang, Shuang Lu, Weilong Guo, Zhongfu Ni, Chaojie Xie, Qixin Sun, Mingshan You. (2020) Characterization of a major quantitative trait locus on the short arm of chromosome 4B for spike number per unit area in common wheat (Triticum aestivum L.), Theoretical and Applied Genetics, 133(7):2259-2269.
DOI: 10.1007/s00122-020-03595-z

21. Xuejiao Cheng, Mingming Xin, Ruibin Xu, Zhaoyan Chen, Wenlong Cai, Lingling Chai, Huanwen Xu, Lin Jia, Zhiyu Feng, Zihao Wang, Huiru Peng, Yingyin Yao, Zhaorong Hu, Weilong Guo, Zhongfu Ni, Qixin Sun. (2020) A Single Amino Acid Substitution in STKc_GSK3 Kinase Conferring Semispherical Grains and Its Implications for the Origin of Triticum sphaerococcum, The Plant Cell, 32(4):923-934.
DOI: 10.1105/tpc.19.00580

20. Zhaoyan Chen, Xuejiao Cheng, Lingling Chai, Zihao Wang, Dejie Du, Zhihui Wang, Ruolin Bian, Aiju Zhao, Mingming Xin, Weilong Guo, Zhaorong Hu, Huiru Peng, Yingyin Yao, Qixin Sun, Zhongfu Ni. (2020) Pleiotropic QTL influencing spikelet number and heading date in common wheat (Triticum aestivum L.), Theoretical and Applied Genetics, 133(6):1825–1838.
DOI: 10.1007/s00122-020-03556-6

19. Linghong Li, Zhongqi Qi, Lingling Chai, Zhaoyan Chen, Tianya Wang, Mingyi Zhang, Mingshan You, Huiru Peng, Yingyin Yao, Zhaorong Hu, Mingming Xin, Weilong Guo, Qixin Sun, Zhongfu Ni. (2020) The semidominant mutation w5 impairs epicuticular wax deposition in common wheat (Triticum aestivum L.), Theoretical and Applied Genetics, 133(4):1213–1225.
DOI: 10.1007/s00122-020-03543-x

18. Zhaoyan Chen, Xuejiao Cheng, Lingling Chai, Zhihui Wang, Ruolin Bian, Jiang Li, Aiju Zhao, Mingming Xin, Weilong Guo, Zhaorong Hu, Huiru Peng, Yingyin Yao, Qixin Sun, Zhongfu Ni. (2020) Dissection of genetic factors underlying grain size and fine mapping of QTgw.cau‐7D in common wheat (Triticum aestivum L.), Theoretical and Applied Genetics, 133(1):149-162.
DOI: 10.1007/s00122-019-03447-5

2019

17. Kaiye Liu, Jie Cao, Kuohai Yu, Xinye Liu, Yujiao Gao, Qian Chen, Wenjia Zhang, Huiru Peng, Jinkun Du, Mingming Xin, Zhaorong Hu, Weilong Guo, Vincenzo Rossi, Zhongfu Ni, Qixin Sun, and Yingyin Yao. (2019) Wheat TaSPL8 Modulates Leaf Angle Through Auxin and Brassinosteroid Signaling, Plant Physiology, 181(1)179–194.
DOI: 10.1104/pp.19.00248

16. Ning Zhang, Jing Xu, Xinye Liu, Wenxing Liang, Mingming Xin, Jinkun Du, Zhaorong Hu, Huiru Peng, Weilong Guo, Zhongfu Ni, Qixin Sun, Yingyin Yao. (2019) Identification of HSP90C as a substrate of E3 ligase TaSAP5 through ubiquitylome profiling, Plant Science, 287, 110170.
DOI: 10.1016/j.plantsci.2019.110170

15. Panfeng Guan, Na Di, Qing Mu, Xueyi Shen, Yongfa Wang, Xiaobo Wang, Kuohai Yu, Wanjun Song, Yongming Chen, Mingming Xin, Zhaorong Hu, Weilong Guo, Yingyin Yao, Zhongfu Ni, Qixin Sun, Huiru Peng. (2019) Use of near-isogenic lines to precisely map and validate a major QTL for grain weight on chromosome 4AL in bread wheat (Triticum aestivum L.), Theoretical and Applied Genetics, 132, 2367–2379.
DOI: 10.1007/s00122-019-03359-4

14. Peng Wu, Yan Gao, Weilong Guo, Ping Zhu. (2019) Using Local Alignment to Enhance Single Cell Bisulfite Sequencing Data Efficiency, Bioinformatics, 35(18):3273–3278.
DOI: 10.1093/bioinformatics/btz125

[Software: scBS-map]

2018

13. Haichuan Zhu, Liuzhen Zhang, Yilin Wu, Bingjie Dong, Weilong Guo, Mei Wang, Lu Yang, Xiaoying Fan, Yuliang Tang, Ningshu Liu, Xiaoguang Lei, Hong Wu. (2018) T-ALL leukemia stem cell 'stemness' is epigenetically controlled by the master regulator SPI1,eLife, 7:e38314.
DOI: 10.7554/elife.38314

12. Lingling Chai, Zhaoyan Chen, Ruolin Bian, Huijie Zhai, Xuejiao Cheng, Huiru Peng, Yingyin Yao, Zhaorong Hu, Mingming Xin, Weilong Guo, Qixin Sun, Aiju Zhao, Zhongfu Ni. (2018) Dissection of two quantitative trait loci with pleiotropic effects on plant height and spike length linked in coupling phase on the short arm of chromosome 2D of common wheat (Triticum aestivum L.), Theoretical and Applied Genetics, 131(12):2621–2637.
DOI: 10.1007/s00122-018-3177-4

11. Yongkang Zou, Zhi Qi, Weilong Guo, Liuzhen Zhang, Marcus Ruscetti, Tanu Shenoy, Ningshu Liu, Hong Wu. (2018) Cotargeting the Cell-Intrinsic and Microenvironment Pathways of Prostate Cancer by PI3Kα/β/δ Inhibitor BAY1082439., Molecular Cancer Therapeutics, 17(10):2091-2099.
DOI: 10.1158/1535-7163.MCT-18-0038

★10. Weilong Guo *#, Ping Zhu*, Matteo Pellegrini, Michael Zhang, Xiangfeng Wang, Zhongfu Ni. (2018) CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data, Bioinformatics, 34:381–387. (# Corresponding Author; * Joint First Authors)
DOI: 10.1093/bioinformatics/btx595

[Software: CGmapTools]

2017 and before

09. Tanu R. Shenoy, Gunther Boysen, Mengyao Wang, Qiu-Zhi Xu, Weilong Guo, Feng M. Koh, Cheng Wang, Liuzhen Zhang, Ying Wang, Veronica Gil, Sarah Aziz, Rossitza Christova, Daniel Nava Rodrigues, Mateus Crespo, Pasquale Rescigno, Nina Tunariu, Ruth Riisnaes, Zafeiris Zafeiriou, Penny Flohr, Wei Yuan, Eleanor Knight, Amanda Swain, Miguel Ramalho-Santos, Dong-Yi Xu, Johann S. de Bono, Hong Wu. (2017) CHD1 loss sensitizes prostate cancer to DNA damaging therapy by promoting error-prone double-strand break repair, Annals of Oncology , 28(7)1495–1507. [ GSE84610]
DOI: 10.1093/annonc/mdx165

★08. Weilong Guo #, Michael Zhang, Hong Wu#. (2016) Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon as, Scientific Reports, 6:32207. [GEO:GSE77019](# Corresponding Authors) ㊥ [Erratum]
DOI: 10.1038/srep32207

07. Qingying Meng, Zhe Ying, Emily Noble, Yuqi Zhao, Rahul Agrawal, Andrew Mikhail, Yumei Zhuang, Ethika Tyagi, Qing Zhang, Jae-Hyung Lee, Marco Morselli, Luz Orozco, Weilong Guo, Tina M. Kilts, Jun Zhu, Bin Zhang, Matteo Pellegrini, Xinshu Xiao, Marian F. Young, Fernando Gomez-Pinilla, Xia Yang. (2016) Systems Nutrigenomics Reveals Brain Gene Networks Linking Metabolic and Brain Disorders, EBioMedicine, 7:157-166.
DOI: 10.1016/j.ebiom.2016.04.008

06. Marcus Ruscetti, Eman L. Dadashian, Weilong Guo, Bill Quach, David J. Mulholland, Juw W. Park, Linh M. Tran, Naoko Kobayashi, Daniella Bianchi-Frias, Peter S. Nelson, Yi Xing, and Hong Wu. (2015) HDAC Inhibition Impedes HMGA2-controlled Epithelial-Mesenchymal Plasticity and Suppresses Metastatic, Castration-Resistant Prostate Cancer, Oncogene, 35(29),1-15.
DOI: 10.1038/onc.2015.444

05. Luz D Orozco, Marco Morselli, Liudmilla Rubbi, Weilong Guo, James Go, Huwenbo Shi, David Lopez, Nicholas A Furlotte, Brian J Bennett, Charles R Farber, Anatole Ghazalpour, Michael Q Zhang, Renata Bahous, Rima Rozen, Aldons J Lusis, Matteo Pellegrini. (2015) Epigenome-wide association of liver methylation patterns and complex metabolic traits in mice, Cell Metabolism,21(6):905-917.
DOI: 10.1016/j.cmet.2015.04.025

04. Yun Li, Jason A. Chen, Renee L. Sears, Fuying Gao, Eric D. Klein, Anna Karydas, Michael D. Geschwind, Howard J. Rosen, Adam L. Boxer, Weilong Guo, Matteo Pellegrini, Steve Horvath, Bruce L. Miller, Daniel H. Geschwind, Giovanni Coppol. (2014) An Epigenetic Signature in Peripheral Blood Associated with the Haplotype on 17q21.31, a Risk Factor for Neurodegenerative Tauopathy, PLoS Genetics, 10(3):e1004211.
DOI: 10.1371/journal.pgen.1004211

★03. Weilong Guo, Wen-Yu Chung, Minping Qian, Matteo Pellegrini, Michael Q. Zhang. (2014) Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells, Nucleic Acids Research, 42(5):3009-3016.
DOI: 10.1093/nar/gkt1306

★02. Weilong Guo, Petko Fiziev, Weihong Yan, Shawn Cokus, Xueguang Sun, Michael Q Zhang, Pao-Yang Chen, Matteo Pellegrini. (2013) BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data, BMC Genomics, 14(1):774.
DOI: 10.1186/1471-2164-14-774

[Software: BS-Seeker2]

01. Ruijuan Li, Weilong Guo, Jin Gu, Michael Q. Zhang, Xiaowo Wang. (2012) Chromatin state and microRNA determine different gene expression dynamics responsive to TNF stimulation, Genomics, 100(5):297-302.
DOI: 10.1016/j.ygeno.2012.07.009

Academical Sevice [top]

• Editor

• Community reviewer

Frontiers in Plant Science

• Invited Reviewer

-- Plant & Agricultural --

Molecular Plant (MP)
The Plant Cell
Journal of Integrative Plant Biology (JIPB)
Plant Biotechnology Journal (PBJ)
Plant Communications (PComm)
Plant Physiology
Crop Journal (CropJ)
Journal of Genetics and Genomics (JGG)
Journal of Integrative Agriculture (JIA)
Plant, Cell & Environment (PCE)
Molecular Breeding
Theoretical and Applied Genetics (TAG)
Plants People Planet (PPP)
Frointiers in Plant Science
Agronomy
Plants
Plant Genome
农业生物技术学报
作物技术学报

Education & Research [top]

2023.12-present Professor

2017.12-2023.12 Associate Professor

2016.06-2017.12 Lecturer (Jiangshi)

2014.07-2016.06 POSTDOC

2009.09-2014.07 PH.D.

2012.10-2013.10 Visiting student

2005.09-2009.07 B.E.

Selected Publications [top]

All Publications [top]

Academical Sevice [top]

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-- Plant & Agricultural --

-- Multidisciplinary journal --

-- Bioinformatics & Genomics --

-- Biology & Others --

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